一、課程說明(Course Description)

Systems biology is a discipline that integrates biochemistry, cell biology,
computer science, and systems engineering to provide a holistic view on
biological functions and structures. The genomic revolution of high-
throughput techniques has opened up systematic investigations and
engineering designs for various life forms. System biology entails synthetic
biology and creates many emerging applications in energy, pharmaceuticals,
bio-materials, foods, ecosystem protection, etc. through engineering
principles. This course will discuss the system-level models of various
basic biological process, analysis of experimental and literature data, and
deduce interesting theoretical insight.
Students will need basic understanding of linear algebra, probability, and
control theory. No prerequisite of biology courses is essential to take this
course.

課程內容
1.Introduction (Cell Biology)
2.Modeling of Biochemical Systems (Basic Mathematics and Control Theory)
3.Specific Biochemical Systems
4.Model Fitting
5.Analysis of High-throughput Data
6.Gene expression Models
7.Stochastic Systems and Variability (Statistics and Stochastic Processes)
8.Network Structures, Dynamics, and Function
9.Optimality and Evolution
10.Experimental Techniques in Molecular Biology
11.Databases
12.Modeling Tools



二、指定用書(Text Books)

教科書 : Lecture Notes (自編講義)


三、參考書籍(References)

1.Systems Biology : A Textbook
Edda Klipp, Wolfram Liebermeister, Christoph Wierling, Axel Kowald, Hans
Lehrach, Ralf Herwig, August 2009, Wiley

2. Systems Biology and Synthetic Biology
Pengcheng Fu, Sven Panke, April 2009, Wiley

3.An Introduction to Systems Biology : Design Principles of Biological
Circuits
Uri Alon, July 2006, Chapman and Hall/CRC

四、教學方式(Teaching Method)

投影片教學

五、教學進度(Syllabus)

一星期一單元為原則

六、成績考核(Evaluation)

期中考及期末考 50% , 作業 50%

七、可連結之網頁位址

遠距會議連結:https://meet.google.com/vcc-wykt-bba